mecfs_bio

Root directory for the ME/CFS biostatistics project.

Modules:

• analysis –

  Scripts that invoke the build system to execute Tasks to analyze biostatistical data.

• asset_generator –

  Convenience functions to generate multiple related Tasks.

• assets –

  Definitions of the Task objects used to fetch biostatistical datasets, preprocess them, perform relevant analysis, and report results.

• build_system –

  Incremental build system framework. See "Build Systems a la Carte" by Mokhov, Mitchell, and Peyton Jones for a conceptual discussion.

• constants –

  Global constants.

• figures –

  Functionality to generate plots and tables from build system assets, and upload them to Github.

• util –

  Miscellaneous utilities related to plotting and the execution of shell subprocesses.