mecfs_bio.analysis

Scripts that invoke the build system to execute Tasks to analyze biostatistical data.

Modules:

• alzheimers –

  This file contains a basic driver script to analyze GWAS of the Alzheimer's phenotype.

• asthma –

  Script to analyze asthma phenotype.

• ct_ldsc_analysis –

  Script to generate a heatmap showing estimated genetic correlation between a diverse collection of traits.

• dbp_analysis –

  Analyze diastolic blood pressure GWAS

• decode_me_fine_mapping –

  Script to run fine mapping analysis on DecodeME data.

• decode_me_initial_analysis –

  Script to run initial analysis on DecodeME data.

• heart_rate_recovery –

  Script to analyze heart rate recovery GWAS of Verweiji et al.

• hhv7_analysis –

  Script to perform standard analysis on Kamitaki et al.'s GWAS of HHV7 DNA levels.

• ibd_analysis –

  Script to analyze inflammatory bowel disease GWAS from Liu et al.

• johnston_multisite_pain_analysis –

  This file contains a basic driver script to analyze the GWAS of the multisite pain phenotype.

• ldl_analysis –

  Script to run basic analysis of LDL GWAS from the Million Veterans Program.

• lee_educational_attainment_analysis –

  Script to run initial analysis on Lee et al. Educational Attainment GWAS

• lupus_analysis –

  Script to analyze the lupus GWAS of Bentham et al.

• psoriasis_analysis –

  Script to analyze psoriasis data from the Million Veterans Program

• pullit_body_fat_analysis –

  Script to analyze the body fat distribution GWAS from Pullit et al.

• red_blood_cell_volume –

  Analyze red blood cell volume GWAS

• ref_data –

  Script to download some reference data. Mainly for testing.

• right_heart_analysis –

  Script to analyze imaging-derived right-heart phenotypes

• runner –

  Build system runners used to analyze GWAS data.

• schizophrenia_analysis –

  Analyze Schizophrenia dataset from PGC 2022

• syncope –

  Analyze the syncope GWAS of Aegisdottir et al.