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mecfs_bio

Root directory for the ME/CFS biostatistics project.

Modules:

  • analysis –

    Scripts that invoke the build system to execute Tasks to analyze biostatistical data.

  • asset_generator –

    Convenience functions to generate multiple related Tasks.

  • assets –

    Definitions of the Task objects used to fetch biostatistical datasets, preprocess them, perform relevant analysis, and report results.

  • build_system –

    Incremental build system framework. See "Build Systems a la Carte" by Mokhov, Mitchell, and Peyton Jones for a conceptual discussion.

  • constants –

    Global constants.

  • figures –

    Functionality to generate plots and tables from build system assets, and upload them to Github.

  • util –

    Miscellaneous utilities related to plotting and the execution of shell subprocesses.

  • vend_files –