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mecfs_bio.analysis.hhv7_analysis

Script to perform standard analysis on Kamitaki et al.'s GWAS of HHV7 DNA levels.

Functions:

  • run_hhv7 –

    Function to perform standard analysis on Kamitaki et al.'s GWAS of HHV7 DNA levels.

run_hhv7 

run_hhv7() -> None

Function to perform standard analysis on Kamitaki et al.'s GWAS of HHV7 DNA levels.

Includes S-LDSC, GTEx MAGMA, and HBA MAGMA

Source code in mecfs_bio/analysis/hhv7_analysis.py 
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def run_hhv7() -> None:
    """
    Function to perform standard analysis on Kamitaki et al.'s GWAS of HHV7 DNA levels.

    Includes S-LDSC, GTEx MAGMA, and HBA MAGMA
    """
    DEFAULT_RUNNER.run(
        KAMITAKI_ET_AL_STANDARD_ANALYSIS.terminal_tasks(),
        incremental_save=True,
        must_rebuild_transitive=[],
    )