mecfs_bio.constants.sldsc_constants

Constants for cell-type-specific stratified LD score regression (S-LDSC).

Attributes:

• SLDSCWeighting –
• SLDSC_CTS_COEF_COL –
• SLDSC_CTS_COEF_SE_COL –
• SLDSC_CTS_NAME_COL –
• SLDSC_CTS_P_COL –
• SLDSC_DEFAULT_MIN_HAPMAP3_SNPS –

SLDSCWeighting module-attribute

SLDSCWeighting = Literal['exact', 'shared_controls']

SLDSC_CTS_COEF_COL module-attribute

SLDSC_CTS_COEF_COL = 'Coefficient'

SLDSC_CTS_COEF_SE_COL module-attribute

SLDSC_CTS_COEF_SE_COL = 'Coefficient_std_error'

SLDSC_CTS_NAME_COL module-attribute

SLDSC_CTS_NAME_COL = 'Name'

SLDSC_CTS_P_COL module-attribute

SLDSC_CTS_P_COL = 'Coefficient_P_value'

SLDSC_DEFAULT_MIN_HAPMAP3_SNPS module-attribute

SLDSC_DEFAULT_MIN_HAPMAP3_SNPS = 100000