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mecfs_bio.constants.ppp_ldsc_constants

Column-name constants for the UKB-PPP LDSC analysis tasks: the per-protein sample-size table and the per-protein heritability table.

The extended-MHC exclusion region used by these tasks is NOT defined here; it reuses the shared genomic constant (extended_mhc_interval / EXTENDED_MHC_BUILD_38 in genomic_coordinate_constants), applied on the index's primary hg38 POS.

Attributes:

PPP_H2_GENE_COL module-attribute 

PPP_H2_GENE_COL = 'gene'

PPP_H2_H2_COL module-attribute 

PPP_H2_H2_COL = 'h2'

PPP_H2_H2_SE_COL module-attribute 

PPP_H2_H2_SE_COL = 'h2_se'

PPP_H2_INTERCEPT_COL module-attribute 

PPP_H2_INTERCEPT_COL = 'intercept'

PPP_H2_LAMBDA_GC_COL module-attribute 

PPP_H2_LAMBDA_GC_COL = 'lambda_gc'

PPP_H2_MEAN_CHI2_COL module-attribute 

PPP_H2_MEAN_CHI2_COL = 'mean_chi2'

PPP_H2_N_BAR_COL module-attribute 

PPP_H2_N_BAR_COL = 'n_bar'

PPP_H2_N_SNPS_COL module-attribute 

PPP_H2_N_SNPS_COL = 'n_snps'

PPP_H2_OID_COL module-attribute 

PPP_H2_OID_COL = 'oid'

PPP_H2_VARIANT_SET_COL module-attribute 

PPP_H2_VARIANT_SET_COL = 'variant_set'

PPP_N_GENE_COL module-attribute 

PPP_N_GENE_COL = 'gene'

PPP_N_OID_COL module-attribute 

PPP_N_OID_COL = 'oid'

PPP_N_SAMPLE_SIZE_COL module-attribute 

PPP_N_SAMPLE_SIZE_COL = 'n'

PPP_N_SYNID_COL module-attribute 

PPP_N_SYNID_COL = 'synapse_id'

PPP_RG_GCOV_COL module-attribute 

PPP_RG_GCOV_COL = 'gcov'

PPP_RG_GCOV_INTERCEPT_COL module-attribute 

PPP_RG_GCOV_INTERCEPT_COL = 'gcov_intercept'

PPP_RG_GENE_COL module-attribute 

PPP_RG_GENE_COL = 'gene'

PPP_RG_H2_PROTEIN_COL module-attribute 

PPP_RG_H2_PROTEIN_COL = 'h2_protein'

PPP_RG_H2_TRAIT_COL module-attribute 

PPP_RG_H2_TRAIT_COL = 'h2_trait'

PPP_RG_N_ASSAYS_COL module-attribute 

PPP_RG_N_ASSAYS_COL = 'n_a'

PPP_RG_N_BAR_PROTEIN_COL module-attribute 

PPP_RG_N_BAR_PROTEIN_COL = 'n_bar_protein'

PPP_RG_N_BAR_TRAIT_COL module-attribute 

PPP_RG_N_BAR_TRAIT_COL = 'n_bar_trait'

PPP_RG_N_SNPS_COL module-attribute 

PPP_RG_N_SNPS_COL = 'n_snps'

PPP_RG_OID_COL module-attribute 

PPP_RG_OID_COL = 'oid'

PPP_RG_RG_COL module-attribute 

PPP_RG_RG_COL = 'rg'

PPP_RG_RG_P_COL module-attribute 

PPP_RG_RG_P_COL = 'rg_p'

PPP_RG_RG_SE_COL module-attribute 

PPP_RG_RG_SE_COL = 'rg_se'

PPP_RG_RG_SPREAD_COL module-attribute 

PPP_RG_RG_SPREAD_COL = 'spr'

PPP_RG_RG_Z_COL module-attribute 

PPP_RG_RG_Z_COL = 'rg_z'

PPP_RG_VARIANT_SET_COL module-attribute 

PPP_RG_VARIANT_SET_COL = 'variant_set'

PPP_VARIANT_SET_ALL module-attribute 

PPP_VARIANT_SET_ALL: PppVariantSet = 'all_variants'

PPP_VARIANT_SET_CIS_EXCLUDED module-attribute 

PPP_VARIANT_SET_CIS_EXCLUDED: PppVariantSet = "cis_excluded"

PppVariantSet module-attribute 

PppVariantSet = Literal['all_variants', 'cis_excluded']