mecfs_bio.constants.ppp_database_constants

Column names specific to the shared UKB-PPP variant index (the parquet table whose row order is the canonical alignment slot for the per-protein beta/se files).

The index otherwise uses gwaslab-standard column names (see gwaslab_constants): CHR, POS, EA, NEA, rsID, EAF. The names below are the index-specific additions.

Attributes:

• Oid –
• PPP_INDEX_ALLELE_KEY_COL –
• PPP_INDEX_IS_STRAND_AMBIGUOUS_COL –
• PPP_INDEX_POS_HG19_COL –
• SynID –

Oid module-attribute

Oid = NewType('Oid', str)

PPP_INDEX_ALLELE_KEY_COL module-attribute

PPP_INDEX_ALLELE_KEY_COL = '__allele_key__'

PPP_INDEX_IS_STRAND_AMBIGUOUS_COL module-attribute

PPP_INDEX_IS_STRAND_AMBIGUOUS_COL = 'is_strand_ambiguous'

PPP_INDEX_POS_HG19_COL module-attribute

PPP_INDEX_POS_HG19_COL = 'POS_HG19'

SynID module-attribute

SynID = NewType('SynID', str)