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figure_task_list

mecfs_bio.figures.figure_task_list

This file contains a list of figures to be exported for use in documentation

Attributes:

ALL_FIGURE_TASKS (list[Task]) –
CAHOY_CNS_REF –
CORCES_ATAC_REF –
GTEX_BRAIN_REF –
IMMGEN_REF –
MULTI_TISSUE_CHROMATIN_REF –
MULTI_TISSUE_GENE_EXPRESSION_REF –

ALL_FIGURE_TASKS `module-attribute`

ALL_FIGURE_TASKS: list[Task] = [
    DECODE_ME_GWAS_1_MANHATTAN_PLOT,
    DECODE_ME_GWAS_1_HERITABILITY_BY_LDSC_MD,
    DECODE_ME_MAGMA_GENE_PLOT,
    DECODE_ME_MAGMA_GENE_PLOT_WITH_WINDOW,
    MAGMA_DECODE_ME_SPECIFIC_TISSUE_ANALYSIS_BAR_PLOT,
    extracted_plot_task,
    magma_independent_cluster_plot_unwrap,
    plot_task_unwrap,
    plot_task_unwrap,
    DECODE_ME_RABGAP1L_REGION_PLOT_37,
    UKBBPPP_RABGAP1L_RABGAP1L_REGION_PLOT_37,
    DECODE_ME_BTN1A1_REGION_PLOT_37,
    plot_task,
    susie_stackplot_task,
    upset_plot_task,
    susie_stackplot_task,
    susie_finemap_2_credible_set_plot,
    upset_plot_task,
    susie_stackplot_task,
    upset_plot_task,
    susie_stackplot_task,
    upset_plot_task,
    upset_plot_task_pip001,
    susie_stackplot_task,
    susie_finemap_2_credible_set_plot,
    susie_finemap_strict_plot,
    upset_plot_task,
    DECODE_ME_GWAS_1_LEAD_VARIANTS_MARKDOWN,
    DECODE_ME_MASTER_GENE_LIST_AS_MARKDOWN,
    DECODE_ME_GWAS_1_MAGMA_GENE_TABLE_MARKDOWN,
    independent_clusters_markdown_task_unwrap,
    md_task,
    multiple_testing_task_markdown,
    multiple_testing_task_markdown,
    multiple_testing_task_markdown,
    multiple_testing_task_markdown,
    multiple_testing_task_markdown,
    multiple_testing_task_markdown,
    susie_base_credible_set_markdown_table,
    susie_base_credible_set_markdown_table,
    susie_2_credible_set_markdown_table,
    susie_base_credible_set_markdown_table,
    susie_base_credible_set_markdown_table,
    susie_base_credible_set_markdown_table,
    susie_strict_credible_set_markdown_table,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    aggregation_markdown_task,
    magma_gene_manhattan_plot_unwrap,
    bar_plot_task,
    extracted_plot_task,
    magma_independent_cluster_plot_unwrap,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    CT_LDSC_INITIAL_PLOT,
    extracted_plot_task,
    bar_plot_task,
    plot_task_unwrap,
    plot_task_unwrap,
    extracted_plot_task,
    bar_plot_task,
    plot_task_unwrap,
    power_plot_task,
    qq_plot_task,
    result_markdown_table_task,
    bar_plot_task_full,
    power_plot_task,
    qq_plot_task,
    result_markdown_table_task,
    JOHNSTON_MAGMA_GENE_PLOT,
    gene_manhattan_plot_task,
    extracted_plot_task,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    gene_manhattan_plot_task,
    independent_clusters_markdown_task_unwrap,
    bar_plot_task,
    bar_plot_task,
    extracted_plot_task,
    independent_clusters_markdown_task_unwrap,
    magma_independent_cluster_plot_unwrap,
    plot_task_unwrap,
    result_table_markdown_task,
    MV_LDL_LDSC_RESULTS_MARKDOWN,
    heritability_markdown_task_unwrap,
    bar_plot_task,
    plot_task_unwrap,
    plot_task_unwrap,
    heritability_markdown_task_unwrap,
    bar_plot_task,
    plot_task_unwrap,
    heritability_markdown_task_unwrap,
    heritability_markdown_task_unwrap,
    bar_plot_task,
    downstream_trait_tables["MI"],
    heritability_markdown_task_unwrap,
    heritability_markdown_task_unwrap,
    heritability_markdown_task_unwrap,
    bar_plot_task,
    aggregation_markdown_task,
    heritability_markdown_task_unwrap,
    bar_plot_task,
    aggregation_markdown_task,
    bar_plot_task,
    extracted_plot_task,
    independent_clusters_markdown_task_unwrap,
    magma_independent_cluster_plot_unwrap,
    plot_task_unwrap,
    heritability_markdown_task_unwrap,
    plot_task_unwrap,
    multiple_testing_task_markdown,
    plot_task_unwrap,
    multiple_testing_task_markdown,
    plot_task_unwrap,
    multiple_testing_task_markdown,
    multiple_testing_task_markdown,
    multiple_testing_task_markdown,
    multiple_testing_task_markdown,
    magma_gene_manhattan_plot_unwrap,
    bar_plot_task,
    heritability_markdown_task_unwrap,
    magma_independent_cluster_plot_unwrap,
    extracted_plot_task,
    magma_gene_manhattan_plot_unwrap,
    bar_plot_task,
    heritability_markdown_task_unwrap,
    extracted_plot_task,
]

CAHOY_CNS_REF `module-attribute`

CAHOY_CNS_REF = 'cahoy_cns'

CORCES_ATAC_REF `module-attribute`

CORCES_ATAC_REF = 'corces_atac'

GTEX_BRAIN_REF `module-attribute`

GTEX_BRAIN_REF = 'gtex_brain'

IMMGEN_REF `module-attribute`

IMMGEN_REF = 'immgen'

MULTI_TISSUE_CHROMATIN_REF `module-attribute`

MULTI_TISSUE_CHROMATIN_REF = 'multi_tissue_chromatin'

MULTI_TISSUE_GENE_EXPRESSION_REF `module-attribute`

MULTI_TISSUE_GENE_EXPRESSION_REF = (
    "multi_tissue_gene_expression"
)