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mecfs_bio.analysis.alzheimers

This file contains a basic driver script to analyze GWAS of the Alzheimer's phenotype.

Functions:

run_initial_alzheimers_analysis 

run_initial_alzheimers_analysis()

Function to analyze GWAS of Alzheimer's phenotype. Includes: - S-LDSC analysis - MAGMA analysis (Using both GTEx and HBA reference data)

Source code in mecfs_bio/analysis/alzheimers.py 
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def run_initial_alzheimers_analysis():
    """
    Function to analyze GWAS of Alzheimer's phenotype.
    Includes:
    - S-LDSC analysis
    - MAGMA analysis (Using both GTEx and HBA reference data)
    """
    DEFAULT_RUNNER.run(
        BELLENGUEZ_STANDARD_ANALYSIS.get_terminal_tasks()
        + [BELLENGUEZ_STANDARD_ANALYSIS.hba_magma_tasks.magma_independent_cluster_plot],
        incremental_save=True,
    )