mecfs_bio.analysis.ct_ldsc_analysis

Script to generate a heatmap showing estimated genetic correlation between a diverse collection of traits. Uses cross-trait linkage disequilibrium score regression to estimate correlation.

See: Bulik-Sullivan, Brendan, et al. "An atlas of genetic correlations across human diseases and traits." Nature genetics 47.11 (2015): 1236-1241.

Functions:

• initial_ct_ldsc_analysis –

initial_ct_ldsc_analysis

initial_ct_ldsc_analysis()

Source code in mecfs_bio/analysis/ct_ldsc_analysis.py

def initial_ct_ldsc_analysis():
    DEFAULT_RUNNER.run([CT_LDSC_INITIAL_PLOT], incremental_save=True)