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mecfs_bio.analysis.heart_rate_recovery

Script to analyze heart rate recovery GWAS of Verweiji et al.

Functions:

run_heart_rate_recovery_analysis 

run_heart_rate_recovery_analysis()

Analyze GWAS of heart rate recovery ( Verweiji et al. (2018)) Analysis includes: - Application of MAGMA to GTEx data to identify possible key tissues. - Application of MAGMA to human brain atlas to identify key brain tissue - Use of S-LDSC to investigate key cell and tissue types

Source code in mecfs_bio/analysis/heart_rate_recovery.py 
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def run_heart_rate_recovery_analysis():
    """
    Analyze GWAS of heart rate recovery ( Verweiji et al. (2018))
    Analysis includes:
    - Application of MAGMA to GTEx data to identify possible key tissues.
    - Application of MAGMA to human brain atlas to identify key brain tissue
    - Use of S-LDSC to investigate key cell and tissue types

    """
    DEFAULT_RUNNER.run(
        VERWEIJI_ET_AL_HRR_STANDARD_ANALYSIS.get_terminal_tasks(),
        incremental_save=True,
        must_rebuild_transitive=[],
    )