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mecfs_bio.analysis.johnston_multisite_pain_analysis

This file contains a basic driver script to analyze the GWAS of the multisite pain phenotype.

Functions:

run_initial_multisite_pain_analysis 

run_initial_multisite_pain_analysis()

Function to analyze GWAS of multisite pain phenotype. Includes: - S-LDSC analysis - MAGMA analysis (Using both GTEx and HBA reference data)

Source code in mecfs_bio/analysis/johnston_multisite_pain_analysis.py 
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def run_initial_multisite_pain_analysis():
    """
    Function to analyze GWAS of multisite pain phenotype.
    Includes:
    - S-LDSC analysis
    - MAGMA analysis (Using both GTEx and HBA reference data)
    """
    DEFAULT_RUNNER.run(
        JOHNSTON_ET_AL_PAIN_STANDARD_ANALYSIS.get_terminal_tasks(),
        incremental_save=True,
    )