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mecfs_bio.analysis.ref_data

Script to download some reference data. Mainly for testing.

Functions:

run_initial_analysis 

run_initial_analysis()
Source code in mecfs_bio/analysis/ref_data.py 
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def run_initial_analysis():
    DEFAULT_RUNNER.run(
        [
            # UKBB_PPP_RABGAP1L,
            # UKBB_PPP_RABGAP1L_UNTAR,
            # STACK_UKBBPPP_RABGAP1L
            # UKBBPPP_RABGAP1L_RABGAP1L_REGION_PLOT_37
            # UKBBPPP_RABGAP1l_SUMSTATS_37_HARMONIZED
            # UNIPROT_LOOKUP
            # GENE_THESAURUS
            # DUNCAN_ET_AL_2025_ST1_EXTRACTED
        ]
        + [BTN1A1_UKBB_PPP_GWAS_PROCESS.plot_task],
        incremental_save=True,
        # must_rebuild_transitive=[SUN_ET_AL_2023_COMBINED_PQTLS_EXTRACTED],
        # must_rebuild_transitive=[PARQUET_DBSNP_37_UNNESTED],
        # must_rebuild_transitive=[DB_SNP150_ANNOVAR_PROC]
    )