mecfs_bio.asset_generator
Convenience functions to generate multiple related Tasks.
Modules:
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annovar_37_basic_rsid_assignment–Asset generator for assigning RSIDS to genome build-37 GWS datasets.
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concrete_magma_asset_generator–Generates MAGMA tasks using standard reference data
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concrete_sldsc_generator–Asset generator for applying S-LDSC using standard reference datasets.
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concrete_standard_analysis_task_generator–Task generators that apply a collection of standard analysis techniques to GWAS summary statistics using standard reference data.
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fine_mapping_asset_generator–Asset generator for fine mapping with SUSIE
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genetic_correlation_asset_generator–Task generator that, given a list of tasks that generate gwaslab sumstats,
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hba_magma_asset_generator–Asset generator for applying MAGMA gene property analysis using the Human Brain Atlas scRNAseq data as a reference.
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labeled_lead_variants_asset_generator–Asset generator to find lead variants of a GWAS using gwaslab.
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mixer_asset_generator–Asset generator to use the MiXeR Gaussian mixture to model the genetic architecture of a trait.
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mr_with_cis_pqtl_asset_generator–Asset generator for applying Mendelian Randomization using cis-pQTLs from the UK Biobank
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ukbb_broad_ld_matrix_generator–Asset generator to automatically determine the optimal UKBB LD matrix to use for fine-mapping
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ukbb_ppp_single_gwas_generator–Asset generator for downloading and preprocessing data from the UK Biobank Pharma Proteomics Project.