mecfs_bio.assets.gwas.me_cfs.decode_me.analysis

Tasks analyzing DecodeME data

Modules:

• decode_me_gwas_1_cis_pqtl_mr –
• decode_me_gwas_1_combined_gene_list_markdown –

  Task to take combined list of candidate genes generated from MAGMA and GWASLAB and write out to a markdown file

• decode_me_gwas_1_combined_gene_list_with_gget –

  Task to use gget to annotate master genes list with annotations from genetics databases.

• decode_me_gwas_1_combined_gene_lists –

  Task to combine lists of candidate genes generated from MAGMA and GWASLAB

• decode_me_gwas_1_lead_variant_region_plots –
• decode_me_gwas_1_lead_variants –
• decode_me_gwas_1_lead_variants_gene_labeled –
• decode_me_gwas_1_manhattan –
• decode_me_gwas_1_manhattan_and_qq –
• decode_me_region_plot_BTN1A1_locus_37 –
• decode_me_region_plot_rabgap1l_locus_37 –
• decode_me_sldsc –

  Generate a chain of tasks to apply S-LDSC to DecodeME GWAS 1

• fine_mapping –
• magma –

  Tasks analyzing DecodeME data using MAGMA

• mixer –