mecfs_bio.assets.gwas.schizophrenia.pgc2022.analysis.sch_clustermap_plot

Generate a clustermap showing gene/tissue specificity for the most significant Schizophrenia genes as detected by MAGMA

Attributes:

• SCH_PGC_2022_MAGMA_CLUSTER_MAP –

SCH_PGC_2022_MAGMA_CLUSTER_MAP module-attribute

SCH_PGC_2022_MAGMA_CLUSTER_MAP = create_standard_gene_magma_heatmap(
    asset_id="sch_pgc_2022_cluster_map_v2",
    gene_specificity_matrix_source=SpecificityMatrixSource(
        GTEx_V10_MEDIAN_TISSUE_EXPRESSION_RNA_SEQ_PREP_FOR_MAGMA,
        pipe=DropColPipe(["Average"]),
        gene_col="Gene",
    ),
    extracted_magma_gene_results_source=GeneInfoSource(
        gene_analysis_extracted_result_task,
        pipe=IdentityPipe(),
        gene_col=MAGMA_GENE_COL,
    ),
    gene_thesaurus_source=GeneInfoSource(
        GENE_THESAURUS,
        pipe=IdentityPipe(),
        gene_col="Gene stable ID",
    ),
)