mecfs_bio.assets.gwas.schizophrenia.pgc2022.raw.raw_sch_pgc2022

Download raw data from the 2022 Schizophrenia GWAS

Citation: Trubetskoy, Vassily, et al. "Mapping genomic loci implicates genes and synaptic biology in schizophrenia." Nature 604.7906 (2022): 502-508.

Download home: https://figshare.com/articles/dataset/scz2022/19426775

Attributes:

• PGC_2022_SCH_RAW –

PGC_2022_SCH_RAW module-attribute

PGC_2022_SCH_RAW = DownloadFileTask(
    meta=GWASSummaryDataFileMeta(
        id=AssetId("pgc_2022_sch_raw"),
        trait="schizophrenia",
        project="pgc_2022",
        sub_dir="raw",
        project_path=PurePath(
            "PGC3_SCZ_wave3.european.autosome.public.v3.vcf.tsv.gz"
        ),
        read_spec=DataFrameReadSpec(
            format=DataFrameTextFormat(
                separator="\t", comment_char="#"
            )
        ),
    ),
    url="https://ndownloader.figshare.com/files/34517828",
    md5_hash="6ebe2376f5cda972d37efa0f214c4df0",
)