mecfs_bio.assets.reference_data.db_snp

Modules:

• db_sn150_build_37_annovar_proc_parquet –
• db_sn150_build_37_annovar_proc_parquet_rename –

  Task to rename the chromosomes in the annovar version of dbsnp 150 to match

• db_sn150_build_37_annovar_proc_parquet_rename_unique –

  Task to deduplicate variants in the annovar version of dbSNP150

• db_snp150_build_37_annovar_proc –
• db_snp_build_37_as_parquet –

  Task to convert dbsnp to parquet form, to make subsequent steps more efficient.

• db_snp_build_37_as_parquet_unnest_ref –

  unnest dbsnp in parquet form.

• db_snp_build_37_as_parquet_unnest_ref_sorted –
• db_snp_vcf_file_for_rsid_assignment_build_37 –
• db_snp_vcf_file_with_index –

  Task that downloads a vcf file containing the genome build 37 dbSNP reference database into a directory,

• snp151_build37_parquet –
• snp151_build_37 –