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mecfs_bio.analysis.fast_ct_ldsc_analysis

Script to compute all-pairs genetic correlation for the initial study traits with the fast CT-LDSC generator, and plot the result.

Functions:

  • fast_ct_ldsc_analysis –

    Compute fast all-pairs CT-LDSC genetic correlation and heritability for the initial traits.

fast_ct_ldsc_analysis 

fast_ct_ldsc_analysis() -> None

Compute fast all-pairs CT-LDSC genetic correlation and heritability for the initial traits.

Source code in mecfs_bio/analysis/fast_ct_ldsc_analysis.py 
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def fast_ct_ldsc_analysis() -> None:
    """
    Compute fast all-pairs CT-LDSC genetic correlation and heritability for the initial traits.
    """
    DEFAULT_RUNNER.run(
        CT_LDSC_FAST_INITIAL_ASSET_GENERATOR.terminal_tasks()
        + [CT_LDSC_FAST_INITIAL_PLOT],
        incremental_save=True,
    )