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mecfs_bio.analysis.ppp_coloc_analysis

Driver to colocalize each v1 trait with the UKB-PPP proteins: raw results and display table per trait.

Functions:

main 

main() -> None
Source code in mecfs_bio/analysis/ppp_coloc_analysis.py 
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def main() -> None:
    run_willer_ldl_ppp_coloc()
    run_decode_me_ppp_coloc()
    run_ra_seropositive_ppp_coloc()
    run_liu_et_al_2023_ibd_ppp_coloc()

run_decode_me_ppp_coloc 

run_decode_me_ppp_coloc() -> None
Source code in mecfs_bio/analysis/ppp_coloc_analysis.py 
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def run_decode_me_ppp_coloc() -> None:
    _run(DECODE_ME_PPP_COLOC)

run_liu_et_al_2023_ibd_ppp_coloc 

run_liu_et_al_2023_ibd_ppp_coloc() -> None
Source code in mecfs_bio/analysis/ppp_coloc_analysis.py 
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def run_liu_et_al_2023_ibd_ppp_coloc() -> None:
    _run(LIU_ET_AL_2023_IBD_PPP_COLOC)

run_ra_seropositive_ppp_coloc 

run_ra_seropositive_ppp_coloc() -> None
Source code in mecfs_bio/analysis/ppp_coloc_analysis.py 
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def run_ra_seropositive_ppp_coloc() -> None:
    _run(RA_SEROPOSITIVE_PPP_COLOC)

run_willer_ldl_ppp_coloc 

run_willer_ldl_ppp_coloc() -> None
Source code in mecfs_bio/analysis/ppp_coloc_analysis.py 
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def run_willer_ldl_ppp_coloc() -> None:
    _run(WILLER_LDL_PPP_COLOC)