mecfs_bio.constants.hgnc_constants

Column names and values of the HGNC complete set (https://www.genenames.org/download/): one row per approved human gene, with its current symbol, its Ensembl gene id and the UniProt accessions of its protein products.

The normalized UniProt-to-gene table (HGNC_UNIPROT_GENES) keeps HGNC_SYMBOL_COL, HGNC_NAME_COL and HGNC_ENSEMBL_ID_COL and has one UniProt accession per row in HGNC_UNIPROT_ID_COL.

Attributes:

• HGNC_ENSEMBL_ID_COL (Final) –
• HGNC_LIST_SEPARATOR (Final) –
• HGNC_LOCUS_TYPE_COL (Final) –
• HGNC_NAME_COL (Final) –
• HGNC_READTHROUGH_LOCUS_TYPE (Final) –
• HGNC_SYMBOL_COL (Final) –
• HGNC_UNIPROT_IDS_COL (Final) –
• HGNC_UNIPROT_ID_COL (Final) –

HGNC_ENSEMBL_ID_COL module-attribute

HGNC_ENSEMBL_ID_COL: Final = 'ensembl_gene_id'

HGNC_LIST_SEPARATOR module-attribute

HGNC_LIST_SEPARATOR: Final = '|'

HGNC_LOCUS_TYPE_COL module-attribute

HGNC_LOCUS_TYPE_COL: Final = 'locus_type'

HGNC_NAME_COL module-attribute

HGNC_NAME_COL: Final = 'name'

HGNC_READTHROUGH_LOCUS_TYPE module-attribute

HGNC_READTHROUGH_LOCUS_TYPE: Final = 'readthrough'

HGNC_SYMBOL_COL module-attribute

HGNC_SYMBOL_COL: Final = 'symbol'

HGNC_UNIPROT_IDS_COL module-attribute

HGNC_UNIPROT_IDS_COL: Final = 'uniprot_ids'

HGNC_UNIPROT_ID_COL module-attribute

HGNC_UNIPROT_ID_COL: Final = 'uniprot_id'