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mecfs_bio.build_system.task.fast_ct_ldsc

Modules:

  • aligned_trait_task –

    Align one trait's z-scores to the fast CT-LDSC regression SNPs, once, behind upstream-bug guards.

  • alignment_guards –

    Fail-fast guards against upstream harmonization bugs in a trait aligned for fast CT-LDSC.

  • all_pairs_rg_task –

    All-pairs cross-trait LDSC genetic correlation for a set of aligned traits.

  • heritability_task –

    Per-trait LDSC heritability and diagnostics for the traits of a fast CT-LDSC study.

  • trait_matrix –

    Stack the aligned traits of a fast CT-LDSC study into (S, T) matrices over the shared context.

  • variant_index_task –

    The shared regression-SNP index for fast all-pairs CT-LDSC.